Книга Вирусы. Скорее друзья, чем враги, страница 132 – Карин Меллинг

ENCODE: Biemont, C. and Vieira, C., Junk DNA as an evolutionary force, Nature 2006; 443:521.

Venter, C., Multiple personal genomes await, Nature 2010, 464:676.

Lev, S. et al., Venter, C., The diploid genome sequence of an individual human, PLoS Biol. 2007; 5: e254.

Fukai, E. et al., Derepression of the plant Chromovirus LORE1 induces germline transposition in regenerated plants, PLoS Genet. 2010; 6(3): e1000868.

Глава 8

RNA: Eigen, M., Error catastrophe and antiviral strategy, PNAS2002; 99:13374.

Biebricher, C.K. and Eigen, M., What is a quasispecies, Curr. Top Microbiol. Immunol. 2006; 299:1.

Biebricher, C.K. and Eigen, M., The error threshold, Virus Res. 2005; 107:117.

Lincoln, T.A. and Joyce, G.F., Self-sustained replication of an RNA enzyme, Science 2009; 323:1229.

Doudna, J.A. and Szostak, J.W., RNA-catalysed synthesis of complementarystrand, RNA Nature 1989; 33:519.

Viroids: Steger, G. et al., Structure of viroid replicative intermediates of PST viroid, Nucl. Acids Res. 1986; 14:9613.

Villarreal, L.P., The widespread evolutionary significance of viruses, Viroids Cell Microbiol. 2008;10:2168.

Cech, T.R. et al., Hammerhead nailed down, Nature 1994; 372:39.

Koonin, E.V. and Dolja, V.V., A virocentric perspective on the evolution of life, Curr. Opin. Virol. 2013; 5:546.

Lambowitz, A.M. and Zimmerly, S., Mobile group II introns, Ann. Rev. Genetics 2004; 38:1.

Adamala, K., Engelhart, A.E., and Szostak, J.W., Generation of functional RNAs from inactive oligonucleotide complexes by non-enzymatic primer extension, J. Am. Chem. Soc. 2015; 137:483–489.

Forterre, P., Defining life: The virus viewpoint, Origins of Life and Evolution of Biospheres 2010; 40:51.

Moelling, K., Are viruses our oldest ancestors? EMBO Reports 2012; 13:1033.

Holmes, E.C., What does virus evolution tell us about virus origins? Journal of Virology 2011; 85:5247.

Plankton: Lescot, M. et al. and Ogata, H., Reverse transcriptase genes are highly abundant and transcriptionally active in marine plankton assemblages, ISME Journal 2015; 1–13.

Circular RNA: Memczak, S. et al., Circular RNAs with regulatory potency, Nature 2013; 495:333.

Hansen, T.B. et al., Natural RNA circles function as efficient microRNA sponges, Nature 2013; 495:384.

Hansen, T.B., Kjems, J., and Damgaard, C.K., Circular RNA and miR-7 in cancer, Cancer Res. 2013; 73:5609.

Ford, E. and Ares, M. Jr., Circular RNA using ribozymes from a T4 group I intron, PNAS1994; 12; 91:3117.

Ribozymes and ribosomes: Wilusz, J.E. and Sharp, P.A., A circuitous route to noncoding RNA. Science 2013; 340:44.

Navarro, B. et al., Viroids: Infect a host and cause disease without encoding proteins, Biochemie 2012; 94:1474.

Hammann, C. and Steger, G., Viroid-specific small RNA in plant disease, RNA Biol. 2012; 9:809.

Bartel, D.P., MicroRNAs target recognition and regulatory functions, Cell 2009; 136:215.

Eilus, J.E. and Sharp, P.A., A circuitous route to non-coding RNA, Science 2013; 340:440.

Proteins: Moore, P.B., and Steitz, T.A., The ribosome revealed, Trends in Biochemical Sciences 2005; 30:28.

Ma, B.G. et al., Zhang, H.Y., Characters of very ancient proteins, BBRC2008; 366:607.

Chaperone: Muller, G. et al., NC protein of HIV-1 for increasing catalytic activity of a ribozyme, J. Mol. Biol. 1994; 242:422.

Clover leaf: Dreher, T.W., Viral tRNAs and tRNA-like structures, Rev. RNA 2010; 1:402.

Hammond, J.A., Comparison and functional implications of viral tRNA-like structures, RNA 2009; 15:294.

Witzany, G. (Editor), Viruses: Essential Agents of Life (Springer 2012), p. 414.

Plant viruses: Eickbush, D.G., Retrotransposon ribozyme and its self-cleavage site, PLoS One 2013; 8(9): e66441.

Webb, C.H. et al., Widespread occurrence of self-cleaving ribozymes, Science 2009; 326:953.

Hammann, C. et al., The ubiquitous hammerhead ribozyme, RNA 2012; 18:871.

Hepatitis delta virus: Braza, R. and Ganem, D., The HDAg may be of human origin, Science 1996; 274:90.

Taylor, J., and Pelchat, M., Origin of hepatitis delta virus, Future Microbiol. 2010; 5:393.

Flores, R., Ruiz-Ruiz, S. and Serra, P., Viroids and hepatitis delta virus, Semin-Liver Dis. 2012; 32:201.

Retrophage: Liu, M. et al., Bordetella bacteriophages encoding RT-mediated tropism-switching, J. Bacteriol. 2004; 186:1503.

Doulatov, S. et al., Tropism switching in Bordetella bacteriophage by diversity-generating retroelements, Nature 2004; 431:476.

Tobacco viruses: Buck, K.W., Replication of tobacco mosaic virus RNA, Philos. Trans. R. Soc. Lond. B. Biol. Sci. 1999; 354:613.

Beijerinck, M.W., Contagum vivum fluidum of tobacco leaves, Phytopathol Classics No. 7, ed. Johnson, J., Am. Phyto. Soc., 1898.

Dreher, T.W., Viral tRNAs and tRNA-like structures, Rev. RNA 2010; 1:402.

Hammond, J.A. et al., 3D architectures of viral tRNA-like structures, RNA 2009; 15:294.

Apple tree: Mitrovic, J. et al., Sequences of Stolbur phytoplasma from DNA, Mol. Microbiol. Biotech. 2014; 24:1.

Georgiades, K. et al., Gene gain and loss events in Rickettsia and Orientia species, Biol. Direct 2011; 6:6.

Plants: Roossinck, M.J., Lifestyles of plant viruses, Philos. Trans. R. Soc. Lond. B. Biol. Sci. 2010; 365:1899.

Geminiviruses: Krupovic M. et al., Geminiviruses: A tale of a plasmid becoming a virus, BMC Evol. Biol. 2009; 9:112.

Tulipomania: Lesnaw, J.A. and Ghabrial, S.A., Tulip breaking: Past, present and future, Plant Disease 2000; 84:1052.

Murray, J.D., How the leopard gets its spots, Sci. Am. 1988; 3:80–87.

Глава 9

Interferon: McNab, F. et al., O’Garra, A., Type Interferons in infectious disease, Nat. Rev. Immunology 2015; 15:87–103.

siRNA: Baulcombe, D.C. and Dean, C., Epigenetic regulation in plant to the environment, CSH Pers.Biol. 2014; 6(9): a019471.

Wilson, R.C. and Doudna, J.A., Molecular mechanisms of RNA interference, Annu. Rev. Biophys. 2013; 42:217.

Moelling K., Matskevich A., and Jung J. S., Relationship between retroviral replication and RNA interference, CSH–SyQB2006; 71:365–8.

Matskevich, A. and Moelling, K., Dicer is involved in protection against influenza A virus infection, J. Gen. Virol. 2007; 88:2627–35.

Song J. J., et al., The crystal structure of the Argonaute2 PAZ domain reveals an RNA binding motif in RNA effector complexes, Nat. Struct. Biol. 2003; 10:1026–32.